The mapping from Galaxy datatypes to EDAM terms uses a mapping file which by default is regate/data/yaml_mapping.yaml in the regate package folder. You can customize this mapping to your convenience by creating a copy of this file and specifying its path in the yaml_file variable of the regate_specific_section section in the configuration file.

You can also use the remag tool, which generates a new mapping file. To generate this mapping, you need to have a local copy of the EDAM ontology OWL file (which can be downloaded from, and set the path to this local file in the edam_file variable of the remag_specific_section in the configuration file. The yaml_file variable of this same section is the path to the mapping file which is produced by remag. To run it, just type:

remag --config_file regate.ini