.. ReGaTE Registration of Galaxy Tools in Elixir Authors: Olivia Doppelt-Azeroual, Fabien Mareuil ReGate is distributed under the terms of the GNU General Public License (GPLv2). See the COPYING file for details. ReGaTE documentation master file, created by sphinx-quickstart .. _configuration: ************* Configuration ************* In order to run ReGaTE you need an account on the http://bio.tools server and on the galaxy server that you want to register. * Register (if you haven't done it yet) on http://bio.tools by clicking on "Sign up" on the http://bio.tools server * Generate the regate.ini configuration file by typing `regate --templateconfig` * Edit the regate.ini configuration file which was created in your working directory. The different variables to edit are **all** documented in the file itself. The ones that you **must** set are: - ``galaxy_url_api`` and ``galaxy_url``, which should be set to the URL of the Galaxy server you aim at publishing in bio.tools. ``galaxy_url`` will be the base of the URL use to link from bio.tools to your Galaxy server, whereas ``galaxy_url_api`` will be used as the Galaxy API endpoint to query the server. - ``api_key`` is the API key for your user on the server. Please remember this key is **absolutely** private, meaning that your configuration file cannot be distributed. - ``contactName`` and `contactEmail` will be used as contact information for all the Galaxy tools registered for your server. - ``resourceName`` is the name of the bio.tools collection that will group all the Galaxy tools from your server. Only these tools should be registered with this collection. - In the ``[regate_specific_section]``, ``login`` is your login on the bio.tools server.